Co-expression Analysis

This tool provides a heatmap, which is a well-received approach to illustrate gene expression data. And gene co-expression analysis can use raw read counts and other quantification measure arising from RNA-Seq.

Read before use

Users need to prepare three files, gene expression matrix, metadata information, and genes list.

The gene expression matrix: The first column is Geneid, other columns are data. The name of first column must be Geneid. Data from excel (format: xlsx).

The metadata: The first column is sample names, the second column is treatment conditions, and the third column is group names. Colnames must be Samples, Names, and Groups. Data from excel (format: xlsx).

The gene list: The first column is Geneid. The name of first column must be Geneid. Data from excel (format: xlsx).

Note: The order of the sample names in both gene expression matrix and metadata information files must be consistent.

Input example data: Gene expression matrix, Metadata information, Gene list.